bistroversion
A library to build and run distributed workflows
bistro is an OCaml library to build and run computations represented by a collection of interdependent scripts, as is often found in data analysis (especially computational biology).
Features:
- build complex and composable workflows declaratively
- simple and lightweight wrapping of new components
- resume-on-failure: if something fails, fix it and the workflow will restart from where it stopped
- parallel workflow execution (locally or over a PBS cluster)
- development-friendly: when a script is modified, bistro automatically finds out what needs to be recomputed
- automatic naming of generated files
- static typing: detect file format errors at compile time!
The library provides a datatype to represent scripts (including metadata and dependencies), an engine to run workflows and a standard library providing components for popular tools (although mostly related to computational biology and unix for now).
Author | Philippe Veber <philippe.veber@gmail.com> |
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License | GPL-1.0-or-later |
Published | |
Homepage | https://github.com/pveber/bistro/ |
Issue Tracker | https://github.com/pveber/bistro/issues |
Maintainer | Philippe Veber <philippe.veber@gmail.com> |
Dependencies | |
Source [http] | https://github.com/pveber/bistro/archive/v0.2.0.tar.gz sha256=02e7bf761ad05dd6d88ebbdfd94602f042799c75ecd8350875a89555f42618dc md5=43320edd9517b8c93cbe78a45261038d |
Edit | https://github.com/ocaml/opam-repository/tree/master/packages/bistro/bistro.0.2.0/opam |
Required by